I do believe the R1 master cylinder is radial in design while the FZ one is not. The 07/08 R1 MC (perhapsthe earlier ones as well?) is a Brembo unit. I would expect there to be some advantage to the R1 piece. . . .If you are using the stock risers and handlebars for the FZ you could probably use stock or stock length aftermarket FZ1 lines. Yes the banjo fitting location on the master cylinder is different for the R1 but I am pretty certain that many who have done this swap simply ordered aftermarket FZ1 lines and it worked just fine. Use your FZ1 set a test fit. . . .In my case, I have a set of wide Easton exp bars on my bike and needed lines 2 inches longer than stock FZ1. I ordered a set of Spiegler lines from Motomummy. These were the FZ1 lines but I requested +2" of length which did not effect cost. The Spiegler lines have the ability to rotate the fittings so I was able to adjust the MC fitting to remove all stress on the line. Hope this helps!